BDgene

SNP Report

Basic Info
Name rs12941497 dbSNP Ensembl
Location chr17:40099341 - 40099341(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.364617
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000246672)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Severino, G.,2009 A/G Alelle association: X2=0.40, P-value = 0.52; Geno...... Alelle association: X2=0.40, P-value = 0.52; Genotype association: X2=3.96, P-value = 0.13 More... Genotype and allele frequency distributions did not differ s...... Genotype and allele frequency distributions did not differ significantly between cases and controls. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NR1D1 nuclear receptor subfamily 1, group D, member 1 17q11.2 6(2/4/0)

SNPs in LD with rs12941497 (count: 1) View in gBrowse (chr17:40099341..40099932 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016