SNP Report

Basic Info

Name	rs12646800 dbSNP Ensembl
Location	chr4:52602534 - 52602534(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.00798722
Functional Annotation	intron_variant; NMD_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000441222, ENST00000451218, ENST00000503060, ENST00000508499, ENST00000514536); NMD_transcript_variant(ENST00000503060, ENST00000514536)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Kushima, I.,2010	G/A		Allele-/genotype wise analyses: X² test, allele P...... Allele-/genotype wise analyses: X² test, allele P-value > 0.05; genotype P-value > 0.05 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
USP46	ubiquitin specific peptidase 46	4q12	1(0/1/0)

SNPs in LD with rs12646800 (count: 0) View in gBrowse (chr4:52602534..52602534 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Kushima, I.,2010	Allele-/genotype wise analyses:X² test, allele P-value = 0.04, P-value > 0.05 after Bonferroni correction;genotype P-value = 0.01, P-value > 0.05 after Bonferroni correction.	No significant association was observed.	Negative

Overlap with MDD from cross-disorder studies (count: 0)