BDgene

SNP Report

Basic Info
Name rs12645507 dbSNP Ensembl
Location chr4:7487332 - 7487332(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.453674
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000329016, ENST00000507866, ENST00000511199); non_coding_transcript_variant(ENST00000511199)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Takata, A.,2011(a) T/C Fisher's exact test: allele P-value = 0.3049, genotype P-val...... Fisher's exact test: allele P-value = 0.3049, genotype P-value = 0.2682 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SORCS2 sortilin-related VPS10 domain containing receptor 2 4p16.1 5(3/2/0)

SNPs in LD with rs12645507 (count: 11) View in gBrowse (chr4:7479148..7490595 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 11)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)