BDgene

SNP Report

Basic Info
Name rs12642204 dbSNP Ensembl
Location chr4:118143102 - 118143102(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.478435
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000296499)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Zhang, C., 2016 T/C P-value=0.09, OR=0.86, 95%CI=0.72-1.02 P-value=0.09, OR=0.86, 95%CI=0.72-1.02 In a comparison between the BD and control groups, no signif...... In a comparison between the BD and control groups, no significant difference was observed in individual SNP marker genotypes or allele distributions. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NDST3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 4q26 1(1/0/0)

SNPs in LD with rs12642204 (count: 15) View in gBrowse (chr4:118055337..118193269 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 15)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016