BDgene

SNP Report

Basic Info
Name rs12608087 dbSNP Ensembl
Location chr18:23816593 - 23816593(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.228235
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000313654, ENST00000399516)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Baum, A. E., 2008 (a) C P-value = 0.011 when genotyped individually in the test samp...... P-value = 0.011 when genotyped individually in the test sample (NIMH); P-value = 0.439 when individually genotyped in the Replication sample (German); P-value = 0.03 in the combined dataset. OR (95% CI)=1.25 (1.02-1.52) More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
LAMA3 laminin, alpha 3 18q11.2 1(0/0/1)

SNPs in LD with rs12608087 (count: 24) View in gBrowse (chr18:23753554..23955167 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 24)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016