BDgene

SNP Report

Basic Info
Name rs1233710 dbSNP Ensembl
Location chr6:28247668 - 28247668(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.201877
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000377294)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Saito T., 2014 T/C First-set screening: P-valuecorrected=1, P-value=...... First-set screening: P-valuecorrected=1, P-value=0.0459, OR=1.15, 95%CI=1.00-1.31 More... Significant association was observed. Significant association was observed. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ZKSCAN4 zinc finger with KRAB and SCAN domains 4 6p21 1(1/0/0)

SNPs in LD with rs1233710 (count: 4) View in gBrowse (chr6:28247668..28352897 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 4)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Saito T., 2014 First-set screening: P-valuecorrected=1, P-value=0.534, OR=1.04, 95%CI=0.91-1.19 No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 0)