BDgene

SNP Report

Basic Info
Name rs12309723 dbSNP Ensembl
Location chr12:102529735 - 102529735(1)
Variant Alleles T/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.148163
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Pereira, A. C.,2011 A/C X2 tests: X2=3.969, P-value = 0.046 X2 tests: X2=3.969, P-value = 0.046 Significant association was found . Significant association was found . Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
IGF1 insulin-like growth factor 1 (somatomedin C) 12q23.2 1(1/0/0)

SNPs in LD with rs12309723 (count: 2) View in gBrowse (chr12:102523658..102529735 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016