BDgene

SNP Report

Basic Info
Name rs12290811 dbSNP Ensembl
Location chr11:79372576 - 79372576(1)
Variant Alleles T/A
Ancestral Allele T
Minor Allele A
Minor Allele Frequence 0.142173
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000278550, ENST00000528688, ENST00000531583); non_coding_transcript_variant(ENST00000528688, ENST00000531583)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Muhleisen, T. W., 2014 A/T A MooDS: P-value=0.0023, OR=1.19; PGC: P-value=9.25E-8, OR=1.1...... MooDS: P-value=0.0023, OR=1.19; PGC: P-value=9.25E-8, OR=1.19; MooDS-PGC: P-value=7.81E-11, adjusted P-value=1.09E-9, OR=1.19 More... Eighteen GWAS SNPs showing genome-wide evidence for associat...... Eighteen GWAS SNPs showing genome-wide evidence for association with BD in the combined MooDS and PGC samples. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TENM4 teneurin transmembrane protein 4 11q13 6(4/2/0)

SNPs in LD with rs12290811 (count: 5) View in gBrowse (chr11:79372205..79395760 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 5)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016