SNP Report

Basic Info

Name	rs1202874 dbSNP Ensembl
Location	chrX:151179756 - 151179756(1)
Variant Alleles	C/T
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.188344
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000218316); upstream_gene_variant(ENST00000454196, ENST00000602313)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	YES

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Macintyre, D. J.,2010	C/T		X² goodness of fit test: P-value = 0.0157 X² goodness of fit test: P-value = 0.0157	Significant association was found in BD. Significant association was found in BD.	Positive

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GPR50-AS1	GPR50 antisense RNA 1	Xq28	Mapped by Literature SNP
GPR50	G protein-coupled receptor 50	Xq28	3(2/1/0)

SNPs in LD with rs1202874 (count: 0) View in gBrowse (chrX:151179756..151179756 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Macintyre, D. J.,2010	X² goodness of fit test:P-value > 0.05	No significant association was observed.	Negative