BDgene

SNP Report

Basic Info
Name rs11992953 dbSNP Ensembl
Location chr8:97092405 - 97092405(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.132188
Functional Annotation intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000220763, ENST00000522617); non_coding_transcript_exon_variant(ENST00000529551, ENST00000532528); non_coding_transcript_variant(ENST00000529551, ENST00000532528)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Djurovic, S.,2010 Combined analysis: J4for Iceland (replication sample): P-val...... Combined analysis: J4for Iceland (replication sample): P-value = 0.048143, OR=0.73, Stouffer's z value=0.0029 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CPQ carboxypeptidase Q 8q22.2 1(0/1/0)

SNPs in LD with rs11992953 (count: 10) View in gBrowse (chr8:97080309..97100403 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 10)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016