BDgene

SNP Report

Basic Info
Name rs11925868 dbSNP Ensembl
Location chr3:120103488 - 120103488(1)
Variant Alleles C/A
Ancestral Allele C
Minor Allele A
Minor Allele Frequence 0.141174
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000469070, ENST00000485898); intron_variant(ENST00000484076); non_coding_transcript_variant(ENST00000484076)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Saus, E.,2010 C/A association analyses with diagnosis: codominant P-value = 0....... association analyses with diagnosis: codominant P-value = 0.069, dominant P-value = 0.063, recessive P-value = 0.405, additive P-value = 0.168 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GSK3B glycogen synthase kinase 3 beta 3q13.3 8(0/8/0)

SNPs in LD with rs11925868 (count: 0) View in gBrowse (chr3:120103488..120103488 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Saus, E.,2010 association analyses with diagnosis:codominant P-value = 0.811, dominant P-value = 0.572, recessive P-value = 0.845, additive P-value = 0.641 No significant association was observed. Negative