BDgene

SNP Report

Basic Info
Name rs11872481 dbSNP Ensembl
Location chr18:9128455 - 9128455(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.0754792
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000318388, ENST00000400033, ENST00000465096, ENST00000474740, ENST00000578850, ENST00000579126, ENST00000582375, ENST00000583081); non_coding_transcript_variant(ENST00000465096, ENST00000474740, ENST00000578850, ENST00000579126, ENST00000582375, ENST00000583081)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, C., 2008 not given in the original text not given in the original text No statistically significant association was found between B...... No statistically significant association was found between BD and this SNP of the NDUFV2 gene examined here. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa 18p11.22 6(5/1/0)

SNPs in LD with rs11872481 (count: 19) View in gBrowse (chr18:9107817..9282144 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 19)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016