BDgene

SNP Report

Basic Info
Name rs11743810 dbSNP Ensembl
Location chr5:138466715 - 138466715(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.360423
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000239938)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Gallitano, A. L.,2012 Association analysis: FBAT, P-value > 0.05 Association analysis: FBAT, P-value > 0.05 No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
EGR1 early growth response 1 5q23-q31 1(0/1/0)

SNPs in LD with rs11743810 (count: 10) View in gBrowse (chr5:138466715..138501556 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 10)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)