SNP Report

Basic Info

Name	rs11657796 dbSNP Ensembl
Location	chr17:80473534 - 80473534(1)
Variant Alleles	C/T
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.101837
Functional Annotation	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000306773, ENST00000571100, ENST00000575212); non_coding_transcript_exon_variant(ENST00000535681); non_coding_transcript_variant(ENST00000535681, ENST00000571100, ENST00000575212)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Rajkumar, A. P., 2014			P-value=0.0109, OR=1.116 P-value=0.0109, OR=1.116	Among the 7 SNPs within NPTX1, rs11657796 had the lowest p-v...... Among the 7 SNPs within NPTX1, rs11657796 had the lowest p-value and showed significant association with BD. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NPTX1	neuronal pentraxin I	17q25.3	2(1/1/0)

SNPs in LD with rs11657796 (count: 0) View in gBrowse (chr17:80473534..80473534 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)