SNP Report

Basic Info

Name	rs11640984 dbSNP Ensembl
Location	chr16:83538287 - 83538287(1)
Variant Alleles	A/C
Ancestral Allele	A
Minor Allele	C
Minor Allele Frequence	0.166334
Functional Annotation	intron_variant; NMD_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000268613, ENST00000428848, ENST00000539548, ENST00000567109); NMD_transcript_variant(ENST00000539548)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Xu, W., 2014	C/A		Adjusted P (ADD)=1.61E-03ï¼ŒÂ OR=1.29 Adjusted P (ADD)=1.61E-03ï¼ŒÂ OR=1.29	SNPs from top 1000 from our combined CAMH/IoP GWAS for BPAD,...... SNPs from top 1000 from our combined CAMH/IoP GWAS for BPAD, for which at least one other non-overlapping GWAS also shows association at same gene. More...	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CDH13	cadherin 13	16q23.3	3(2/1/0)

SNPs in LD with rs11640984 (count: 3) View in gBrowse (chr16:83523711..83538287 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs4782544	intron_variant; NMD_transcript_variant	0.907[CEU]
rs4496127	intron_variant; NMD_transcript_variant	0.886[CEU]
rs4380043	intron_variant; NMD_transcript_variant	0.913[CEU]; 0.937[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)