SNP Report

Basic Info

Name	rs11617400 dbSNP Ensembl
Location	chr13:51003439 - 51003439(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.196486
Functional Annotation	downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000485590, ENST00000531898); intron_variant(ENST00000493639, ENST00000533288); non_coding_transcript_variant(ENST00000493639, ENST00000533288)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Djurovic, S.,2010			Combined analysis: for TOP Norway (discovery sample): P-valu...... Combined analysis: for TOP Norway (discovery sample): P-value = 0.0000373, OR=1.8 More...	Suggestive association was found(P-values ranging from 5.39E...... Suggestive association was found(P-values ranging from 5.39E-07 to 9.95E-05). More...	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GUCY1B2	guanylate cyclase 1, soluble, beta 2 (pseudogene)	13q14.3	1(0/0/1)

SNPs in LD with rs11617400 (count: 4) View in gBrowse (chr13:51002748..51005549 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs11618422	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1.0[CEU]
rs7332491	downstream_gene_variant; intron_variant; non_coding_transcript_variant	0.808[CEU]
rs3790020	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1.0[CEU]
rs3790021	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1.0[CEU]; 1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)