BDgene

SNP Report

Basic Info
Name rs11594566 dbSNP Ensembl
Location chr10:113153211 - 113153211(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.103235
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000369389, ENST00000636236, ENST00000636309, ENST00000636447, ENST00000637321, ENST00000637416); intron_variant(ENST00000277945, ENST00000352065, ENST00000355717, ENST00000355995, ENST00000369386, ENST00000369395, ENST00000369397, ENST00000466338, ENST00000470254, ENST00000480888, ENST00000534894, ENST00000536810, ENST00000538897, ENST00000542695, ENST00000543371, ENST00000545257, ENST00000627217, ENST00000629706); NMD_transcript_variant(ENST00000470254); upstream_gene_variant(ENST00000471569)
No. of Studies 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) 10q25.3 1(1/0/0)

SNPs in LD with rs11594566 (count: 0) View in gBrowse (chr10:113153211..113153211 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)