SNP Report

Basic Info

Name	rs11564773 dbSNP Ensembl
Location	chrCHR_HSCHR5_3_CTG1:1435609 - 1435609(-1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	C
Minor Allele Frequence	0.0938498
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000270349, ENST00000512002); non_coding_transcript_variant(ENST00000512002, ENST00000621716)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Mick, E., 2008		C	TDT X²(df=1)=0.02, P-value = 0.999, OR (95% CI)=1...... TDT X²(df=1)=0.02, P-value = 0.999, OR (95% CI)=1.22(0.66-2.28) More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SLC6A3	solute carrier family 6 (neurotransmitter transporter), member 3	5p15.3	11(5/6/0)

SNPs in LD with rs11564773 (count: 2) View in gBrowse (chrCHR_HSCHR5_3_CTG1:1433625..1435609 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs11564771		intron_variant; non_coding_transcript_variant	1.0[CEU]
rs11564772		intron_variant; non_coding_transcript_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)