BDgene

SNP Report

Basic Info
Name rs11553502 dbSNP Ensembl
Location chr7:30615926 - 30615926(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.0251597
Functional Annotation non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant.
Consequence to Transcript non_coding_transcript_exon_variant(ENST00000478124, ENST00000484093); non_coding_transcript_variant(ENST00000478124, ENST00000484093); synonymous_variant(ENST00000389266, LRG_243t1)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ceulemans, S.,2011 C/T Single SNP analyses: Permuted P-value = 0.4567, Odds Ratio=0...... Single SNP analyses: Permuted P-value = 0.4567, Odds Ratio=0.6098 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CRHR2 corticotropin releasing hormone receptor 2 7p14.3 3(2/1/0)
GARS glycyl-tRNA synthetase 7p15 Mapped by Literature SNP

SNPs in LD with rs11553502 (count: 12) View in gBrowse (chr7:30572232..30702408 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 12)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016