SNP Report

Basic Info

Name	rs1133353 dbSNP Ensembl
Location	chr2:240582850 - 240582850(1)
Variant Alleles	A/T
Ancestral Allele	T
Minor Allele	A
Minor Allele Frequence	0.125
Functional Annotation	downstream_gene_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000270357, ENST00000437406, ENST00000481757, ENST00000486058); non_coding_transcript_exon_variant(ENST00000567819); non_coding_transcript_variant(ENST00000567819); upstream_gene_variant(ENST00000270361, ENST00000270364, ENST00000352879, ENST00000354082, ENST00000357048, ENST00000391983, ENST00000391984, ENST00000404753, ENST00000416591, ENST00000463653)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Jiang, Y.,2011			Non-weighted test under H0: P-value(additive)=0.00000643, P-...... Non-weighted test under H0: P-value(additive)=0.00000643, P-value(dominant)=0.000134, P-value(recessive)=0.000115; weighted test under H'0: P-value(additive)=0.0000053, P-value(dominant)=0.000127, P-value(recessive)=0.00014; logistic regression: P-value(additive)=0.00000782, P-value(dominant)=0.000126, P-value(recessive)=0.000175 More...	Suggestive association was found. Suggestive association was found.	Trend

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CAPN10-AS1	CAPN10 antisense RNA 1 (head to head)	2q37.3	Mapped by Literature SNP
CAPN10	calpain 10	2q37.3	1(1/0/0)
RNPEPL1	arginyl aminopeptidase (aminopeptidase B)-like 1	2q37.3	2(1/0/1)

SNPs in LD with rs1133353 (count: 0) View in gBrowse (chr2:240582850..240582850 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)