BDgene

SNP Report

Basic Info
Name rs10994430 dbSNP Ensembl
Location chr10:60612195 - 60612195(1)
Variant Alleles G/T
Ancestral Allele G
Minor Allele T
Minor Allele Frequence 0.158147
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000373827, ENST00000510382); non_coding_transcript_variant(ENST00000510382)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Muhleisen, T. W., 2014 T/G T MooDS: P-value=4.96E-4, OR=1.22; PGC: P-value=6.43E-6, OR=1....... MooDS: P-value=4.96E-4, OR=1.22; PGC: P-value=6.43E-6, OR=1.17; MooDS-PGC: P-value=1.61E-8, adjusted P-value=2.14E-8, OR=1.18 More... Eighteen GWAS SNPs showing genome-wide evidence for associat...... Eighteen GWAS SNPs showing genome-wide evidence for association with BD in the combined MooDS and PGC samples. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ANK3 ankyrin 3, node of Ranvier (ankyrin G) 10q21 17(13/3/1)

SNPs in LD with rs10994430 (count: 8) View in gBrowse (chr10:60600101..60673682 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 8)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016