SNP Report

Basic Info

Name	rs10901040 dbSNP Ensembl
Location	chr7:154638563 - 154638563(1)
Variant Alleles	T/C
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.210264
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000332007, ENST00000377770, ENST00000404039, ENST00000427557, ENST00000634466, ENST00000634541, ENST00000634779, ENST00000635128)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Djurovic, S.,2010			Combined analysis: for TOP Norway (discovery sample): P-valu...... Combined analysis: for TOP Norway (discovery sample): P-value = 0.001021, OR=0.605 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
DPP6	dipeptidyl-peptidase 6	7q36.2	2(1/1/0)
ZXDC	ZXD family zinc finger C	3q21.3	1(0/1/0)

SNPs in LD with rs10901040 (count: 8) View in gBrowse (chr7:154637098..154638563 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs11243339	intron_variant; synonymous_variant	0.95[CEU]; 0.973[TSI]
rs7800584	intron_variant	1.0[CEU]
rs6972501	intron_variant	0.95[CEU]; 0.974[TSI]
rs7800130	intron_variant	0.95[CEU]; 0.974[TSI]
rs11243338	intron_variant	0.901[TSI]
rs6961341	intron_variant	0.903[CEU]; 0.974[TSI]
rs6968015	intron_variant	0.95[CEU]; 1.0[TSI]
rs7800390	intron_variant	0.95[CEU]; 0.974[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)