BDgene

SNP Report

Basic Info
Name rs10838527 dbSNP Ensembl
Location chr11:45881643 - 45881643(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.101438
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000443527, ENST00000616623); downstream_gene_variant(ENST00000417225, ENST00000488962, ENST00000616080); upstream_gene_variant(ENST00000241014)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sjoholm, L. K.,2010 G/A Association analysis: allele P-value = 0.06, empirical P-val...... Association analysis: allele P-value = 0.06, empirical P-value = 0.07, OR [95% CI]=1.51[0.9822.33]; genotype, Cochran-Armitage trend P-value = 0.039, Logistic regression: Dominant model, P-value = 0.046, OR[95%CI]=1.56[1.0122.42] More... Significant association was found in BD. Significant association was found in BD. Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CRY2 cryptochrome circadian clock 2 11p11.2 5(3/2/0)
MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 11p11.2 Mapped by Literature SNP

SNPs in LD with rs10838527 (count: 3) View in gBrowse (chr11:45856910..45881643 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016