BDgene

SNP Report

Basic Info
Name rs10838524 dbSNP Ensembl
Location chr11:45848626 - 45848626(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.338458
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000417225, ENST00000443527, ENST00000473199, ENST00000496571, ENST00000532390, ENST00000616080, ENST00000616623); non_coding_transcript_variant(ENST00000473199, ENST00000496571, ENST00000532390)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sjoholm, L. K.,2010 A/G Association analysis: allele P-value = 0.0076, empirical P-v...... Association analysis: allele P-value = 0.0076, empirical P-value = 0.022, OR [95% CI]=1.42[1.1021.83]; genotype, Cochran-Armitage trend P-value = 0.0076, Logistic regression: Dominant model, P-value = 0.0081, OR[95%CI]=1.79[1.1622.75], Recessive model, P-value = 0.1, OR[95%CI]=1.42[0.9322.16] More... Significant association was found in BD. Significant association was found in BD. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CRY2 cryptochrome circadian clock 2 11p11.2 5(3/2/0)

SNPs in LD with rs10838524 (count: 6) View in gBrowse (chr11:45818158..45857441 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 6)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
To view this website normally, please make sure to allow Flash to run from the local filesystem in the security settings panel.
Last update: March 31, 2016