BDgene

SNP Report

Basic Info
Name rs10821792 dbSNP Ensembl
Location chr10:60538858 - 60538858(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.146565
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000373827, ENST00000503366, ENST00000510382, ENST00000622427); NMD_transcript_variant(ENST00000622427); non_coding_transcript_variant(ENST00000510382)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Dedman, A.,2012 A/G Association analysis: for UCL1 sample, P-value = 0.033, OR=1...... Association analysis: for UCL1 sample, P-value = 0.033, OR=1.48; for UCL2 sample, P-value = 0.44, OR=1.13; for UCL1+UCL2 sample, P-value = 0.02, OR=1.31 More... Significant association was observed in BD. Significant association was observed in BD. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ANK3 ankyrin 3, node of Ranvier (ankyrin G) 10q21 17(13/3/1)

SNPs in LD with rs10821792 (count: 3) View in gBrowse (chr10:60523076..60538858 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016