BDgene

SNP Report

Basic Info
Name rs10778502 dbSNP Ensembl
Location chr12:106696423 - 106696423(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.401757
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000536722, ENST00000552917); downstream_gene_variant(ENST00000552866); intron_variant(ENST00000549203, ENST00000551505); NMD_transcript_variant(ENST00000536722, ENST00000552917); non_coding_transcript_exon_variant(ENST00000536688); non_coding_transcript_variant(ENST00000536688, ENST00000549203, ENST00000551505); synonymous_variant(ENST00000229387, ENST00000357881, ENST00000392842, ENST00000539967, ENST00000551640)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2009 C/T Allelic association: P-value = 0.28 Allelic association: P-value = 0.28 No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RFX4 regulatory factor X, 4 (influences HLA class II expression) 12q24 2(1/1/0)

SNPs in LD with rs10778502 (count: 56) View in gBrowse (chr12:106659907..106846169 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 56)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016