SNP Report

Basic Info

Name	rs1076292 dbSNP Ensembl
Location	chr7:30673085 - 30673085(1)
Variant Alleles	C/G
Ancestral Allele	C
Minor Allele	G
Minor Allele Frequence	0.413938
Functional Annotation	intron_variant; NMD_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000341843, ENST00000348438, ENST00000452278, ENST00000471646, ENST00000506074); NMD_transcript_variant(ENST00000452278)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Ceulemans, S.,2011	C/G		Single SNP analyses: Permuted P-value = 0.3933, Odds Ratio=0...... Single SNP analyses: Permuted P-value = 0.3933, Odds Ratio=0.8979 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CRHR2	corticotropin releasing hormone receptor 2	7p14.3	3(2/1/0)

SNPs in LD with rs1076292 (count: 6) View in gBrowse (chr7:30673085..30689292 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs255097	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant	0.836[CEU]
rs2284219	intron_variant; NMD_transcript_variant	0.916[CEU]
rs733453	intron_variant; NMD_transcript_variant	0.916[CEU]
rs2251002	intron_variant; NMD_transcript_variant	1.0[CEU]
rs2284218	intron_variant; NMD_transcript_variant	0.913[CEU]
rs255100	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; splice_region_variant	0.807[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)