BDgene

SNP Report

Basic Info
Name rs10761482 dbSNP Ensembl
Location chr10:60325579 - 60325579(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.285743
Functional Annotation intron_variant; NMD_transcript_variant.
Consequence to Transcript intron_variant(ENST00000280772, ENST00000373827, ENST00000503366, ENST00000622427); NMD_transcript_variant(ENST00000622427)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Gella, A.,2011 C/T Genotype association: CC P-value = 0.015, CT P-value = 0.063...... Genotype association: CC P-value = 0.015, CT P-value = 0.063, TT P-value = 0.19 for BD. More... Significant association was found. Significant association was found. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ANK3 ankyrin 3, node of Ranvier (ankyrin G) 10q21 17(13/3/1)

SNPs in LD with rs10761482 (count: 40) View in gBrowse (chr10:60301499..60361354 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 40)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Gella, A.,2011 Genotype association:CC P-value = 0.593, CT P-value = 0.196, TT P-value = 0.113 for SZ. No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016