BDgene

SNP Report

Basic Info
Name rs1053046 dbSNP Ensembl
Location chr6:35427801 - 35427801(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.168131
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000311565, ENST00000360694, ENST00000418635, ENST00000448077); downstream_gene_variant(ENST00000337400)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Zandi, P. P, 2008 (a) G/A Allelic P-value = 0.14 Allelic P-value = 0.14 Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PPARD peroxisome proliferator-activated receptor delta 6p21.2 1(1/0/0)

SNPs in LD with rs1053046 (count: 1) View in gBrowse (chr6:35427801..35470792 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)