BDgene

SNP Report

Basic Info
Name rs10508451 dbSNP Ensembl
Location chr10:12962213 - 12962213(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.460863
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000378825, ENST00000378839)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? YES
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Huang, J.,2010 T/C Omnibus GWAS Test: P-value = 0.0000287, best-fit model is Bi...... Omnibus GWAS Test: P-value = 0.0000287, best-fit model is Bipolar II specific More... Suggestive association was found in BD-II. Suggestive association was found in BD-II. Trend

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
OPTN optineurin 10p14 1(0/0/1)
CCDC3 coiled-coil domain containing 3 10p14 Mapped by Literature SNP

SNPs in LD with rs10508451 (count: 0) View in gBrowse (chr10:12962213..12962213 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Huang, J.,2010 Omnibus GWAS Test:P-value > 5E-05 No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Huang, J.,2010 Omnibus GWAS Test:P-value > 5E-05 No significant association was observed. Negative

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016