SNP Report

Basic Info

Name	rs1049862 dbSNP Ensembl
Location	chr10:60029514 - 60029514(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.280152
Functional Annotation	3_prime_UTR_variant; downstream_gene_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000280772, ENST00000373820, ENST00000373827); downstream_gene_variant(ENST00000355288, ENST00000480699, ENST00000489505, ENST00000502769, ENST00000503366, ENST00000612776)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Fiorentino A., 2014	G/A		eurMLP=0.15 eurMLP=0.15	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ANK3	ankyrin 3, node of Ranvier (ankyrin G)	10q21	17(13/3/1)

SNPs in LD with rs1049862 (count: 2) View in gBrowse (chr10:60029514..60033762 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs11813307		intron_variant; non_coding_transcript_variant	0.81[CEU]
rs12357206		intron_variant; non_coding_transcript_variant	0.961[CEU]; 0.978[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)