BDgene

SNP Report

Basic Info
Name rs1040315 dbSNP Ensembl
Location chr21:40452925 - 40452925(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.248802
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000400454)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Amano, K., 2008 T/C Genotypic P-value = 0.6721, allelic P-value = 0.5057 for BD ...... Genotypic P-value = 0.6721, allelic P-value = 0.5057 for BD when compared with controls More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DSCAM Down syndrome cell adhesion molecule 21q22.2-q22.3 3(1/2/0)

SNPs in LD with rs1040315 (count: 7) View in gBrowse (chr21:40449814..40495416 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016