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SNP Report
Basic Info
| Name | rs1025526 dbSNP Ensembl | ||
|---|---|---|---|
| Location | chr1:231614895 - 231614895(1) | ||
| Variant Alleles | C/T | ||
| Ancestral Allele | C | ||
| Minor Allele | T | ||
| Minor Allele Frequence | 0.439896 | ||
| Functional Annotation | intron_variant; NMD_transcript_variant; upstream_gene_variant. | ||
| Consequence to Transcript | intron_variant(ENST00000602567, ENST00000602634, ENST00000602885, ENST00000602956, ENST00000602962); NMD_transcript_variant(ENST00000602567, ENST00000602634, ENST00000602885, ENST00000602956, ENST00000602962); upstream_gene_variant(ENST00000448058) | ||
| No. of Studies | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
| Overlap with SZ? | YES | ||
| Overlap with MDD? | NO | ||
SNP related studies (count: 1)
SNP related genes (count: 3)
| Approved Symbol | Approved Name | Location | No. of Studies (Positive/Negative/Trend)  |
|---|---|---|---|
| TSNAX | translin-associated factor X | 1q42.2 | 4(3/1/0) |
| DISC1 | disrupted in schizophrenia 1 | 1q42.1 | 18(10/7/1) |
| LINC00582 | long intergenic non-protein coding RNA 582 | 1q42.2 | Mapped by Literature SNP |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 12)
Overlap with SZ from cross-disorder studies (count: 1)
| Reference | Statistical Result | Description | Result Category |
|---|---|---|---|
| Thomson, P. A.,2005(a) | Single-Marker Analysis:allele frequency, for SZ, P-value = 0.86 | No significant association was observed. | Negative |
Overlap with MDD from cross-disorder studies (count: 0)