BDgene

SNP Report

Basic Info
Name rs10245440 dbSNP Ensembl
Location chr7:21422914 - 21422914(1)
Variant Alleles C/A
Ancestral Allele C
Minor Allele A
Minor Allele Frequence 0.335463
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Zhou, X.,2009 C/A Allelic association: Caucasian Families for Bipolar Disorder...... Allelic association: Caucasian Families for Bipolar Disorder: TDT: Risk allele is A, MAF=0.24, P-value = 0.647; Chinese Case-Controls for Bipolar Disorder: Risk allele is C, MAF=0.46, P-value = 0.187 More... No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SP4 Sp4 transcription factor 7p15 1(1/0/0)

SNPs in LD with rs10245440 (count: 0) View in gBrowse (chr7:21422914..21422914 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Zhou, X.,2009 Allelic association:Chinese Trios for Schizophrenia:TDT:Risk allele is C, MAF=0.451, P-value = 0.955 No significant association was observed Negative

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016