BDgene

SNP Report

Basic Info
Name rs10134944 dbSNP Ensembl
Location chr14:57652478 - 57652478(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.148762
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000556568, ENST00000556826, ENST00000557430); non_coding_transcript_variant(ENST00000556568, ENST00000557430)
No. of Studies 2 (Positive: 0; Negative: 0; Trend: 2)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
The Wellcome Trust Case Control Consortium, 2007 T Genotypic P-value = 6.89E-06; Heterozygote OR (95%CI)=1.45 ...... Genotypic P-value = 6.89E-06; Heterozygote OR (95%CI)=1.45 (1.24-1.68); Homozygote OR (95%CI)=1.32 (0.74-2.33) More... showing moderate evidence of association with BD showing moderate evidence of association with BD Trend
Jiang, Y.,2011 Non-weighted test under H0: P-value(additive)=0.00000322, P-...... Non-weighted test under H0: P-value(additive)=0.00000322, P-value(dominant)=0.00000115, P-value(recessive)=0.479; weighted test under H'0: P-value(additive)=0.00000396, P-value(dominant)=0.000000745, P-value(recessive)=0.678; logistic regression: P-value(additive)=0.00000246, P-value(dominant)=0.000000793, P-value(recessive)=0.507 More... Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SLC35F4 solute carrier family 35, member F4 14q22.3 Mapped by Literature SNP

SNPs in LD with rs10134944 (count: 19) View in gBrowse (chr14:57652478..57701849 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 19)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016