BDgene

SNP Report

Basic Info
Name rs10034164 dbSNP Ensembl
Location chr4:52593565 - 52593565(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.192093
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000441222); downstream_gene_variant(ENST00000451218, ENST00000503060, ENST00000508499, ENST00000514536)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kushima, I.,2010 A/G Allele-/genotype wise analyses: X2 test, allele P...... Allele-/genotype wise analyses: X2 test, allele P-value > 0.05; genotype P-value > 0.05 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
USP46 ubiquitin specific peptidase 46 4q12 1(0/1/0)

SNPs in LD with rs10034164 (count: 51) View in gBrowse (chr4:52553919..52759934 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 51)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Kushima, I.,2010 Allele-/genotype wise analyses:X2 test, allele P-value > 0.05;genotype P-value > 0.05 No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016