BDgene

SNP Report

Basic Info
Name rs1000117 dbSNP Ensembl
Location chr6:15873758 - 15873758(1)
Variant Alleles G/T
Ancestral Allele T
Minor Allele G
Minor Allele Frequence 0.370807
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Perlis, 2008 Mean X2=3.46, P-value = 0.38 in gene-based associ...... Mean X2=3.46, P-value = 0.38 in gene-based association tests More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DTNBP1 dystrobrevin binding protein 1 6p22.3 8(4/3/1)

SNPs in LD with rs1000117 (count: 5) View in gBrowse (chr6:15860111..15877496 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 5)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016