BDgene

Core Gene from Gene Prioritization Pathways from PBA (Pathway-based Analysis) Enriched Pathways for Core Genes Enriched Pathways for Cross-disorder Genes

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KEGG Pathway Report

Basic Info

ID	hsa00534
Name	Heparan sulfate biosynthesis
No. of Genes in BDgene	3
Source	Pathway by PBA

PBA Result

Pathway Name in Paper	Source	Reference	Data Set	Tool	Result Parameters	Result Link
Heparan sulfate biosynthesis	PBA paper	Peng, G., 2010	WTCCC	hypergeometric test (Fisher's exact test), Sidak's method, Simes' method, Simes/FDR method	Simes/FDR P-value=0.00644879

Pathway related genes in BDgene (count: 3)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
HS6ST2	heparan sulfate 6-O-sulfotransferase 2	Xq26.2	1(0/0/1)
NDST3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	4q26	1(1/0/0)
EXTL1	exostosin-like glycosyltransferase 1	1p36.1	1(1/0/0)