BDgene

Gene Report

Basic information Related studies Functional annotation Related other genetic factors Overlap with SZ and MDD ADD to My Gene Set Comment on Gene View All Comments on Gene
Basic Info
Approved Symbol SETD4
Previous Symbol C21orf27, C21orf18
Approved Name SET domain containing 4
Previous Name chromosome 21 open reading frame 27, "chromosome 21 open reading frame 18"
Location 21q22.13
Position chr21:36034541-36079389, -1
External Links HGNC: 1258
Entrez Gene: 54093
Ensembl: ENSG00000185917
UCSC: uc021wiy.2
No. of Studies 1 (Positive: 1; Negative: 0; trend: 0)
Overlap with SZ? NO
Overlap with MDD? NO
Gene related studies (count: 1)
Reference Tested Markers Statistical Values/Author Comments Result Category Comment on Study
Hattori, E.,2009 SNP: rs2018721, rs2835248 After the two-stage analysis, markers in this gene remained nominally significant (allelic P<0.05) with the same allele being consistently over-represented in both the first and the follow-up stages. Positive Comment on Study
Gene functional annotation
Gene related GO terms (count: 2)

GO terms by PBA (count: 0)

GO terms by database search (count: 2)


Gene related KEGG pathways (count: 0)

Gene related BioCarta pathways (count: 0)

Gene related interactors from protein-protein interactions data in HPRD (count: 0)

Related other genetic factors
Gene related SNPs (count: 23)

Literature-origin SNPs (count: 2)

LD-proxies (count: 21)


Gene related CNVs (count: 0)

Gene related other variants (count: 0)

Gene related regions (count: 4)

Overlap with schizophrenia (SZ) and major depressive disorder (MDD)
Gene relationship with SZ

Gene relationship with MDD

View in gBrowse

Region: chr21:36034541..36079389 View in gBrowse
View in gBrowse

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
To view this website normally, please make sure to allow Flash to run from the local filesystem in the security settings panel.
Last update: March 31, 2016