Gene Report

Basic information

Functional annotation

Related other genetic factors

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Basic Info

Approved Symbol	MAPT-AS1
Approved Name	MAPT antisense RNA 1
Previous Name	MAPT antisense RNA 1 (non-protein coding)
Location	17q21.31
Position	chr17:45799390-45895630, -1
External Links	HGNC: 43738 Entrez Gene: 100128977 Ensembl: ENSG00000264589 UCSC: uc010wjz.2
No. of Studies	0. Gene is from "Mapped by Literature SNP "

Gene functional annotation

Gene related GO terms (count: 0)

Gene related KEGG pathways (count: 0)

Gene related BioCarta pathways (count: 0)

Gene related interactors from protein-protein interactions data in HPRD (count: 0)

Related other genetic factors

Gene related SNPs (count: 109)

Literature-origin SNPs (count: 29)

rs_ID	Location	Functional Annotation	No. of Studies (Positive/Negative/Trend)
rs12150516	chrCHR_HSCHR17_2_CTG5:45878776 - 45878776(1)	intron_variant; non_coding_transcript_variant	1(0/1/0)
rs4458044	chrCHR_HSCHR17_2_CTG5:45807968 - 45807968(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1(0/1/0)
rs10445368	chrCHR_HSCHR17_2_CTG5:45867430 - 45867430(1)	intron_variant; non_coding_transcript_variant	1(0/1/0)
rs4792825	chrCHR_HSCHR17_2_CTG5:45853933 - 45853933(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs878886	chrCHR_HSCHR17_2_CTG5:45846743 - 45846743(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant	3(0/3/0)
rs11652070	chrCHR_HSCHR17_2_CTG5:45862919 - 45862919(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1(0/1/0)
rs17763658	chrCHR_HSCHR17_2_CTG5:45856892 - 45856892(1)	intron_variant; missense_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs12936511	chrCHR_HSCHR17_2_CTG5:45818655 - 45818655(1)	5_prime_UTR_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant; upstream_gene_variant	2(0/2/0)
rs17762769	chrCHR_HSCHR17_2_CTG5:45827656 - 45827656(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs8064870	chrCHR_HSCHR17_2_CTG5:45861041 - 45861041(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs3785877	chrCHR_HSCHR17_2_CTG5:45826441 - 45826441(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs4792891	chrCHR_HSCHR17_2_CTG5:45907757 - 45907757(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs242943	chrCHR_HSCHR17_2_CTG5:45858664 - 45858664(1)	3_prime_UTR_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs171443	chrCHR_HSCHR17_2_CTG5:45858150 - 45858150(1)	intron_variant; non_coding_transcript_variant; synonymous_variant; upstream_gene_variant	1(0/1/0)
rs242937	chrCHR_HSCHR17_2_CTG5:45832621 - 45832621(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant	2(0/2/0)
rs4616318	chrCHR_HSCHR17_2_CTG5:45863062 - 45863062(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1(0/1/0)
rs1864325	chrCHR_HSCHR17_2_CTG5:45912086 - 45912086(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs242944	chrCHR_HSCHR17_2_CTG5:45857432 - 45857432(1)	intron_variant; missense_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs4792887	chrCHR_HSCHR17_2_CTG5:45811268 - 45811268(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	4(0/4/0)
rs110402	chrCHR_HSCHR17_2_CTG5:45814295 - 45814295(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant	4(0/4/0)
rs9896752	chrCHR_HSCHR17_2_CTG5:45864452 - 45864452(1)	intron_variant; non_coding_transcript_variant	1(0/1/0)
rs7210728	chrCHR_HSCHR17_2_CTG5:45902677 - 45902677(1)	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs2055794	chrCHR_HSCHR17_2_CTG5:45885975 - 45885975(1)	intron_variant; non_coding_transcript_variant	1(0/1/0)
rs7224541	chrCHR_HSCHR17_2_CTG5:45908853 - 45908853(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs173365	chrCHR_HSCHR17_2_CTG5:45835327 - 45835327(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	3(0/3/0)
rs242950	chrCHR_HSCHR17_2_CTG5:45844906 - 45844906(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant	3(0/3/0)
rs16940655	chrCHR_HSCHR17_2_CTG5:45828139 - 45828139(1)	5_prime_UTR_variant; downstream_gene_variant; intron_variant; missense_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant; non_coding_transcript_exon_variant	1(1/0/0)
rs17690703	chrCHR_HSCHR17_2_CTG5:45859549 - 45859549(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs11657992	chrCHR_HSCHR17_2_CTG5:45855165 - 45855165(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant; non_coding_transcript_exon_variant	1(0/1/0)

LD-proxies (count: 80)

rs_ID	Location	Functional Annotation
rs16940704	chrCHR_HSCHR17_2_CTG5:45862376 - 45862376(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant
rs12952224	chrCHR_HSCHR17_2_CTG5:45809071 - 45809071(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs16940686	chrCHR_HSCHR17_2_CTG5:45847283 - 45847283(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs8072451	chrCHR_HSCHR17_2_CTG5:45827969 - 45827969(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs242936	chrCHR_HSCHR17_2_CTG5:45833462 - 45833462(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs17689471	chrCHR_HSCHR17_2_CTG5:45827226 - 45827226(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs1396862	chrCHR_HSCHR17_2_CTG5:45837250 - 45837250(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant
rs17689824	chrCHR_HSCHR17_2_CTG5:45838650 - 45838650(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant
rs17763086	chrCHR_HSCHR17_2_CTG5:45839734 - 45839734(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs17689882	chrCHR_HSCHR17_2_CTG5:45841081 - 45841081(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs4277389	chrCHR_HSCHR17_2_CTG5:45829906 - 45829906(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs4566211	chrCHR_HSCHR17_2_CTG5:45829949 - 45829949(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs17762954	chrCHR_HSCHR17_2_CTG5:45834039 - 45834039(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs1912151	chrCHR_HSCHR17_2_CTG5:45837197 - 45837197(1)	3_prime_UTR_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; splice_region_variant; upstream_gene_variant
rs16940677	chrCHR_HSCHR17_2_CTG5:45846151 - 45846151(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs4640231	chrCHR_HSCHR17_2_CTG5:45847039 - 45847039(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs17763533	chrCHR_HSCHR17_2_CTG5:45852442 - 45852442(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs17763596	chrCHR_HSCHR17_2_CTG5:45855462 - 45855462(1)	downstream_gene_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant
rs16940665	chrCHR_HSCHR17_2_CTG5:45842149 - 45842149(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; stop_lost; synonymous_variant; upstream_gene_variant; stop_gained
rs17689918	chrCHR_HSCHR17_2_CTG5:45844341 - 45844341(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs16940674	chrCHR_HSCHR17_2_CTG5:45844760 - 45844760(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; missense_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant
rs1876829	chrCHR_HSCHR17_2_CTG5:45845696 - 45845696(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs12373168	chrCHR_HSCHR17_2_CTG5:45858589 - 45858589(1)	3_prime_UTR_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs12373139	chrCHR_HSCHR17_2_CTG5:45858382 - 45858382(1)	intron_variant; missense_variant; non_coding_transcript_variant; upstream_gene_variant
rs10445335	chrCHR_HSCHR17_2_CTG5:45869153 - 45869153(1)	intron_variant; non_coding_transcript_variant
rs17769490	chrCHR_HSCHR17_2_CTG5:45859857 - 45859857(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs12185268	chrCHR_HSCHR17_2_CTG5:45857935 - 45857935(1)	intron_variant; missense_variant; non_coding_transcript_variant; upstream_gene_variant
rs17763634	chrCHR_HSCHR17_2_CTG5:45856006 - 45856006(1)	intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs12373123	chrCHR_HSCHR17_2_CTG5:45858325 - 45858325(1)	intron_variant; missense_variant; non_coding_transcript_variant; upstream_gene_variant
rs12185235	chrCHR_HSCHR17_2_CTG5:45857955 - 45857955(1)	intron_variant; non_coding_transcript_variant; synonymous_variant; upstream_gene_variant
rs17691328	chrCHR_HSCHR17_2_CTG5:45889745 - 45889745(1)	intron_variant; non_coding_transcript_variant
rs4441322	chrCHR_HSCHR17_2_CTG5:45889288 - 45889288(1)	intron_variant; non_coding_transcript_variant
rs17691610	chrCHR_HSCHR17_2_CTG5:45904924 - 45904924(1)	intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs17770108	chrCHR_HSCHR17_2_CTG5:45895550 - 45895550(1)	intron_variant; non_coding_transcript_variant
rs34097347	chrCHR_HSCHR17_2_CTG5:45883706 - 45883706(1)	intron_variant; non_coding_transcript_variant
rs10445370	chrCHR_HSCHR17_2_CTG5:45869375 - 45869375(1)	intron_variant; non_coding_transcript_variant
rs17689966	chrCHR_HSCHR17_2_CTG5:45844708 - 45844708(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs916793	chrCHR_HSCHR17_2_CTG5:45888944 - 45888944(1)	intron_variant; non_coding_transcript_variant
rs10491140	chrCHR_HSCHR17_2_CTG5:45885234 - 45885234(1)	intron_variant; non_coding_transcript_variant
rs16940646	chrCHR_HSCHR17_2_CTG5:45814159 - 45814159(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs4792888	chrCHR_HSCHR17_2_CTG5:45812202 - 45812202(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant
rs4792886	chrCHR_HSCHR17_2_CTG5:45811080 - 45811080(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant
rs12936181	chrCHR_HSCHR17_2_CTG5:45810727 - 45810727(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs12944996	chrCHR_HSCHR17_2_CTG5:45810701 - 45810701(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs16969853	chrCHR_HSCHR17_2_CTG5:45814407 - 45814407(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs171440	chrCHR_HSCHR17_2_CTG5:45827740 - 45827740(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant
rs81189	chrCHR_HSCHR17_2_CTG5:45829051 - 45829051(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs242924	chrCHR_HSCHR17_2_CTG5:45819620 - 45819620(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs9890016	chrCHR_HSCHR17_2_CTG5:45863948 - 45863948(1)	intron_variant; non_coding_transcript_variant
rs17691508	chrCHR_HSCHR17_2_CTG5:45902725 - 45902725(1)	intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs17691466	chrCHR_HSCHR17_2_CTG5:45902481 - 45902481(1)	intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs17691449	chrCHR_HSCHR17_2_CTG5:45898541 - 45898541(1)	intron_variant; non_coding_transcript_variant
rs17770186	chrCHR_HSCHR17_2_CTG5:45898449 - 45898449(1)	intron_variant; non_coding_transcript_variant
rs17770343	chrCHR_HSCHR17_2_CTG5:45904416 - 45904416(1)	intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs17770337	chrCHR_HSCHR17_2_CTG5:45904041 - 45904041(1)	intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs17691556	chrCHR_HSCHR17_2_CTG5:45903430 - 45903430(1)	intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs17770296	chrCHR_HSCHR17_2_CTG5:45903398 - 45903398(1)	intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs2106784	chrCHR_HSCHR17_2_CTG5:45884150 - 45884150(1)	intron_variant; non_coding_transcript_variant
rs1078830	chrCHR_HSCHR17_2_CTG5:45880369 - 45880369(1)	intron_variant; non_coding_transcript_variant
rs2873269	chrCHR_HSCHR17_2_CTG5:45865374 - 45865374(1)	intron_variant; non_coding_transcript_variant
rs885639	chrCHR_HSCHR17_2_CTG5:45862866 - 45862866(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant
rs17770150	chrCHR_HSCHR17_2_CTG5:45898421 - 45898421(1)	intron_variant; non_coding_transcript_variant
rs17770120	chrCHR_HSCHR17_2_CTG5:45898201 - 45898201(1)	intron_variant; non_coding_transcript_variant
rs2019822	chrCHR_HSCHR17_2_CTG5:45894176 - 45894176(1)	intron_variant; non_coding_transcript_variant
rs2158072	chrCHR_HSCHR17_2_CTG5:45884453 - 45884453(1)	intron_variant; non_coding_transcript_variant
rs242933	chrCHR_HSCHR17_2_CTG5:45872727 - 45872727(1)	intron_variant; non_coding_transcript_variant
rs12373124	chrCHR_HSCHR17_2_CTG5:45858471 - 45858471(1)	intron_variant; non_coding_transcript_variant; synonymous_variant; upstream_gene_variant
rs17690661	chrCHR_HSCHR17_2_CTG5:45858773 - 45858773(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs17690679	chrCHR_HSCHR17_2_CTG5:45859055 - 45859055(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs17769552	chrCHR_HSCHR17_2_CTG5:45861542 - 45861542(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant
rs17690326	chrCHR_HSCHR17_2_CTG5:45855226 - 45855226(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant; non_coding_transcript_exon_variant
rs12185233	chrCHR_HSCHR17_2_CTG5:45857906 - 45857906(1)	intron_variant; missense_variant; non_coding_transcript_variant; upstream_gene_variant
rs11079725	chrCHR_HSCHR17_2_CTG5:45858186 - 45858186(1)	intron_variant; non_coding_transcript_variant; synonymous_variant; upstream_gene_variant
rs12373142	chrCHR_HSCHR17_2_CTG5:45858452 - 45858452(1)	intron_variant; missense_variant; non_coding_transcript_variant; upstream_gene_variant
rs1876831	chrCHR_HSCHR17_2_CTG5:45841998 - 45841998(1)	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant
rs878887	chrCHR_HSCHR17_2_CTG5:45846835 - 45846835(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
rs242926	chrCHR_HSCHR17_2_CTG5:45900367 - 45900367(1)	intron_variant; non_coding_transcript_variant
rs10445364	chrCHR_HSCHR17_2_CTG5:45850608 - 45850608(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant
rs17690314	chrCHR_HSCHR17_2_CTG5:45854136 - 45854136(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs17689653	chrCHR_HSCHR17_2_CTG5:45833216 - 45833216(1)	intron_variant; NMD_transcript_variant; non_coding_transcript_variant

Gene related CNVs (count: 0)

Gene related other variants (count: 0)

Gene related regions (count: 0)

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Region: chr17:45799390..45895630 View in gBrowse