Gene Report

ADD to My Gene Set

Basic Info

Approved Symbol	CACNA1C-AS4
Approved Name	CACNA1C antisense RNA 4
Previous Name	CACNA1C antisense RNA 4 (non-protein coding)
Location	12p13.33
Position	chr12:2220537-2223479, -1
External Links	HGNC: 40116 Entrez Gene: 100874234 Ensembl: ENSG00000256025 UCSC: uc031qfm.1
No. of Studies	0. Gene is from "Mapped by Literature SNP "

Gene functional annotation

Gene related GO terms (count: 0)

Gene related KEGG pathways (count: 0)

Gene related BioCarta pathways (count: 0)

Gene related interactors from protein-protein interactions data in HPRD (count: 0)

Related other genetic factors

Gene related SNPs (count: 15)

rs_ID	Location	Functional Annotation	No. of Studies (Positive/Negative/Trend)
rs2283291	chr12:2228294 - 2228294(1)	intron_variant; upstream_gene_variant	1(0/1/0)
rs11062162	chr12:2222938 - 2222938(1)	intron_variant; non_coding_transcript_variant	1(0/1/0)
rs3922316	chr12:2221978 - 2221978(1)	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs11062159	chr12:2217058 - 2217058(1)	downstream_gene_variant; intron_variant	1(0/1/0)
rs2190771	chr12:2222026 - 2222026(1)	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs2239030	chr12:2226775 - 2226775(1)	intron_variant; upstream_gene_variant	1(0/1/0)
rs10848642	chr12:2222406 - 2222406(1)	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant	2(0/2/0)
rs10774034	chr12:2221292 - 2221292(1)	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs1108222	chr12:2223690 - 2223690(1)	intron_variant; upstream_gene_variant	1(0/1/0)
rs4765904	chr12:2223227 - 2223227(1)	intron_variant; non_coding_transcript_variant	1(0/1/0)
rs11062161	chr12:2220804 - 2220804(1)	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant	1(0/1/0)
rs1108073	chr12:2224472 - 2224472(1)	intron_variant; upstream_gene_variant	1(0/1/0)
rs1108074	chr12:2224318 - 2224318(1)	intron_variant; upstream_gene_variant	1(0/1/0)

rs_ID	Literature-origin SNPs with LD	Location	Functional Annotation
rs2238056		chr12:2218778 - 2218778(1)	downstream_gene_variant; intron_variant; upstream_gene_variant
rs1108221		chr12:2223629 - 2223629(1)	intron_variant; upstream_gene_variant

Gene related CNVs (count: 0)

Gene related other variants (count: 0)

Gene related regions (count: 0)

View in gBrowse

Region: chr12:2220537..2223479 View in gBrowse